rs215703602 SNP Detail

Summary

• ID
  rs215703602
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:24022383 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAAGCCAG AACATTTCCT
  GAGAATATTC TCAACAGACT CTATATTCTA CTGTAGATTT ATTTACTCAT TCATGTTTAT
  TGCTTCTCTG TTCACAATCA CCAGGAAATG AAAAGGTTTA AAATGTCCCA TCACCTGATA
  AATGTGTAAT GATACATGGA AGATTATTCA ACCATAAAGA AAAATCAAAC TACAAAATTA
  W
  CAGTTCGGTG CATTTCTCAG CCCTCATCAG GGAAGCTTCT TTTTATAGTA TAAGGTGATT
  AATACAAAGA CCCACGGCTT GTCAAAATCT AGGGAGTAAG AGACTGTGGT ATGATCAGCT
  TTAAAAGGGC ATCTGTGTCA CATTCTTGAT CATAAGGCTC AGGAAGCATT GTAGAAGAGG
  CATCTTAAGC ACCAGAGGTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324292291	CHEV_13_23930269	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215703602					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:24022383 () rs orientation: forward

Symbol	Name	Function Class
Gm56568	predicted gene, 56568	1 bp downstream
Rr475959	regulatory region 475959	1486 bp distal
Rr475960	regulatory region 475960	1038 bp proximal
Rr475961	regulatory region 475961	1121 bp proximal
Slc17a3	solute carrier family 17 (sodium phosphate), member 3	Intron
Tssr4011	transcription start site region 4011	1225 bp upstream
Tssr4012	transcription start site region 4012	1323 bp upstream
Tssr118873	transcription start site region 118873	1490 bp downstream
Tssr118874	transcription start site region 118874	1439 bp downstream
Tssr118875	transcription start site region 118875	1001 bp upstream
Tssr118876	transcription start site region 118876	1045 bp upstream
Tssr118877	transcription start site region 118877	1177 bp upstream
Tssr118878	transcription start site region 118878	1198 bp upstream