rs215719974 SNP Detail

Summary

• ID
  rs215719974
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:27537720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTACCACG CCCATGTTTA
  CTGTCACTTG ATGACTTGGC CTCTTTATTA ATCTACCTCC ATTTTATAAT CGACCTGAGT
  TTTCTTTTGA TCATGCGAAG ATGGTTACTT TGAATCTGCT AGAGTATTTA TCTTTAATAT
  ATTTTCTGTA GTTAACACAT AGCTGGGTCT GACTTTTCAA ATCTAAATGT GGCAAATTTT
  R
  GCGTTTAGAC GATTTACAGT ACTTTTAATG CGATTAGTTT TATTAAGAGG CTCGTCTAGC
  CTGCCTAACG GACACAGTTC TGTTGGTACA TAGCGATACG GTCCTCAGTC ACATTTTCTA
  TCTAAAGCAG GGAATTCAGA CTCCTCCGTC TTCTCTACAG GAGAAAGAAA ATCAGTTACG
  CGGAGAACCG GAAGTACCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370847441	MGP_WTSI_7_28623314	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	A	A	A	G	G	G	G	A	G	G	A	A	G	G	A	G	G	G	A	G	A	G	A	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs215719974					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	A	A	A	G	G	G	G	A	G	G	A	A	G	G	A	G	G	G	A	G	A	G	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370847441	MGP_WTSI_7_28623314	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:27537720 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18676	CpG island 18676	172 bp proximal
Gm74121	predicted gene, 74121	within coordinates
Rr167341	regulatory region 167341	within coordinates
Rr380558	regulatory region 380558	within coordinates
Tssr65334	transcription start site region 65334	247 bp upstream
Tssr65335	transcription start site region 65335	265 bp upstream
Zfp59	zinc finger protein 59	312 bp upstream