rs215726292 SNP Detail

Summary

• ID
  rs215726292
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:55499151 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGGCAAG TGCTGCCTCG
  CTGTTTTTAC TTGCATCACC ATTTTTGGTC TTATTTCTGA GAAAACATAA TATATATCAA
  TCATGTAGAA CATATACACA GGATATCTAC AAACAATATA GAAAACATTT GCAGATATAT
  ATGTGATCTT CACATTGTAT TAAAATTGTA TACTCATTGA AGCTCAAGAG TCTAACTTGT
  R
  TACAGCACAT TGCTAGAAAT ACTCTGTATC ATTATCATCA TTATCGCCAT CATCAGTGTT
  GTAGGAGACT CAAACTCAGC GCCTCACAGG AGCTGGGCAA ACATCGTACT CCTATGCTGC
  AACACTACCT CATACTCTAT ATTAAAAATA ATGTCACAGT AGTTGGCATA GCACACGCTT
  GTAGGATATG CTGAGGAGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss403511843	MGP_WTSI_X_53706968	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs215726292					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403511843	MGP_WTSI_X_53706968	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:55499151 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22728	CpG island 22728	1438 bp proximal
Gm61797	predicted gene, 61797	within coordinates
Ints6l	integrator complex subunit 6 like	1066 bp upstream
Rr406100	regulatory region 406100	906 bp upstream
Rr691425	regulatory region 691425	465 bp proximal
Rr691426	regulatory region 691426	922 bp proximal
Rr691427	regulatory region 691427	1105 bp proximal
Tssr160984	transcription start site region 160984	1023 bp upstream
Tssr160985	transcription start site region 160985	1045 bp upstream
Tssr160986	transcription start site region 160986	1060 bp upstream
Tssr160987	transcription start site region 160987	1080 bp upstream
Tssr160988	transcription start site region 160988	1128 bp upstream
Tssr160989	transcription start site region 160989	1668 bp upstream