rs215728362 SNP Detail

Summary

• ID
  rs215728362
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:94763542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCGGCGTGA GGGAGGAGCG
  CGCACTGGGA GAGCATCAAC GGCCGAGGCC GCGCCGCACT TACAGATTAA TGGTGCGCTC
  CAGGGTGAGG GGCTTGGTCT GCTGGATGTA CTTGTTGCCG AACTGGTTGA CCCCCCGGGG
  CCAGCCCGTC TGCGAGCGAT TGGGCGGCAC CACAGACATG CTGAACAGCT CCGACGCCGG
  S
  GACGTGCAGA AAGCGGGGGC CCGGGGAGAC GTCCGCGGGG CGGGCAGCGG TTATCTGCGT
  CCCGCTCAGC AGCCACCACC CGCCATTAAC AGTCGAGAGC AAGAGGCGCG GAACACACGC
  CGGAAGTGAA TACGCTCCGG AGGCAGGAAG TTGGGAGGCA GGCCACTGCG ACCATTTGAC
  CAATTGCTGG CGGCGTGACG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375632574	MGP_WTSI_8_96560814	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	C	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs215728362					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	C	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375632574	MGP_WTSI_8_96560814	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:94763542 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20835	CpG island 20835	within coordinates
Nudt21	nudix hydrolase 21	mRNA-UTR
Ogfod1	2-oxoglutarate and iron-dependent oxygenase domain containing 1	284 bp upstream
Rr368582	regulatory region 368582	69 bp upstream
Rr667878	regulatory region 667878	1379 bp distal
Rr667879	regulatory region 667879	82 bp proximal
Rr667880	regulatory region 667880	1681 bp proximal
Tssr78816	transcription start site region 78816	307 bp upstream
Tssr82477	transcription start site region 82477	93 bp downstream
Tssr82478	transcription start site region 82478	121 bp downstream