rs215738499 SNP Detail

Summary

• ID
  rs215738499
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:145812472 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCACGTTCA CTCTCGGACA TTCGCTATCG
  CCAGCGGCAC GAGAACCGAG AAGGAACCTG GGCCCCAAAT GCACGCGCAC TGGAGCGCAG
  CAGGGCCAGG GCAGCGGCGC TTGGGTTCCG GGGACGGATC TGGGTCGCGG GCCAGGGCGG
  Y
  TGGAGCGGGT CACGTGCCGG GAGCCTCCTC CCCGCCTAGC CGCGCGGCGC TGGAGCCCAA
  GTCCTGGGCG GAGCTGCCGG GATGAGTTCC TTTCCAGCAC CCTCCCTGGT TCCTCGAGTA
  GGACGACAGG GCTTGTTTTG CAGCAGGCGA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322074612	CHEV_6_145815266	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215738499					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:145812472 () rs orientation: forward

Symbol	Name	Function Class
Bhlhe41	basic helix-loop-helix family, member e41	1326 bp upstream
Cpgi18163	CpG island 18163	within coordinates
Gm43909	predicted gene, 43909	1574 bp downstream
Gm67122	predicted gene, 67122	within coordinates
Gm67129	predicted gene, 67129	432 bp downstream
Tssr59563	transcription start site region 59563	1053 bp downstream
Tssr64086	transcription start site region 64086	1855 bp upstream
Tssr64087	transcription start site region 64087	1387 bp upstream
Tssr64088	transcription start site region 64088	1363 bp upstream
Tssr64089	transcription start site region 64089	1334 bp upstream
Tssr64090	transcription start site region 64090	1311 bp upstream
Tssr64091	transcription start site region 64091	1272 bp upstream
Tssr64092	transcription start site region 64092	1210 bp upstream
Tssr64093	transcription start site region 64093	1189 bp upstream
Tssr64094	transcription start site region 64094	1174 bp upstream