rs215740030 SNP Detail

Summary

• ID
  rs215740030
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134069385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGG AAAGAAGAGA AGAGAGGAGA
  R
  GAGAGGAGAG GAGAGGAGAG GAGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ
ss640568022	FVB_NJ_4_133897989	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	A	A	A	A	G	G	G	G	G	A	G	A	A	G	G	G	A	G	A	G	G	G	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ
rs215740030					SNP	G	G	A	A	A	A	G	G	G	G	G	A	G	A	A	G	G	G	A	G	A	G	G	G	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss640568022	FVB_NJ_4_133897989	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134069385 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15035	CpG island 15035	848 bp proximal
Rr601645	regulatory region 601645	617 bp proximal
Slc30a2	solute carrier family 30 (zinc transporter), member 2	1107 bp upstream
Tssr39548	transcription start site region 39548	1069 bp upstream
Tssr39549	transcription start site region 39549	1124 bp upstream
Tssr39550	transcription start site region 39550	1419 bp upstream
Tssr39551	transcription start site region 39551	1449 bp upstream
Tssr39552	transcription start site region 39552	1524 bp upstream
Tssr39553	transcription start site region 39553	1558 bp upstream
Tssr39554	transcription start site region 39554	1609 bp upstream
Tssr39555	transcription start site region 39555	1808 bp upstream
Tssr39556	transcription start site region 39556	1928 bp upstream