rs215750533 SNP Detail

Summary

• ID
  rs215750533
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69302215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAATCCAGC CTTCCCAACC
  CGACCTACAG CCCCCAAAAG CCGGCCGCCC AGAAAGGGTT AATTCCACTT GAGTCGAAAC
  CACGCCCTCT CCATCCGGGC ACTCCCGGTA AAGCCAAGCT CCGCCTCCCG CATCCGGGAT
  CTGGACTCTA GGACTTTAAC CGACCCCCCC ACACACACAC ACCTCCCTTA GTCCCAGGAG
  R
  GAACTACTCC ATCAATCACA CCCACTTAAC TCTCTCTGGG CTTGGGTCAG AAGAGCCCCT
  CCGCGCAGCT CACGGAACGC GGGGTATAAG AGGGACGCTT GGCACGAGGC CTGCGACCCG
  CAAGCAGACA CTGGACGACC AAAGACACCA GACCCCGCAG AACGATTTTT CCTGAACATG
  CATTTAAGCC AGCACGCACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383783484	MGP_WTSI_11_69224891	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs215750533					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383783484	MGP_WTSI_11_69224891	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69302215 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3128	CpG island 3128	within coordinates
Gm72923	predicted gene, 72923	within coordinates
Gm72933	predicted gene, 72933	1492 bp upstream
Kdm6b	KDM1 lysine (K)-specific demethylase 6B	within coordinates
Rr247028	regulatory region 247028	within coordinates
Rr369256	regulatory region 369256	1406 bp downstream
Rr402671	regulatory region 402671	1729 bp downstream
Tssr102458	transcription start site region 102458	1700 bp downstream
Tssr102459	transcription start site region 102459	1669 bp downstream
Tssr102460	transcription start site region 102460	1644 bp downstream
Tssr102461	transcription start site region 102461	1610 bp downstream
Tssr102462	transcription start site region 102462	1577 bp downstream
Tssr102463	transcription start site region 102463	807 bp downstream
Tssr102464	transcription start site region 102464	535 bp downstream
Tssr102465	transcription start site region 102465	414 bp downstream
Tssr102466	transcription start site region 102466	273 bp downstream
Tssr102467	transcription start site region 102467	47 bp downstream
Tssr102468	transcription start site region 102468	6 bp downstream
Tssr102469	transcription start site region 102469	8 bp upstream
Tssr102470	transcription start site region 102470	576 bp upstream
Tssr108667	transcription start site region 108667	1978 bp upstream
Tssr108668	transcription start site region 108668	1967 bp upstream
Tssr108669	transcription start site region 108669	1944 bp upstream
Tssr108670	transcription start site region 108670	1820 bp upstream
Tssr108671	transcription start site region 108671	1483 bp upstream
Tssr108672	transcription start site region 108672	1009 bp upstream
Tssr108673	transcription start site region 108673	957 bp upstream
Tssr108674	transcription start site region 108674	936 bp upstream
Tssr108675	transcription start site region 108675	773 bp upstream
Tssr108676	transcription start site region 108676	722 bp upstream
Tssr108677	transcription start site region 108677	682 bp upstream
Tssr108678	transcription start site region 108678	653 bp upstream
Tssr108679	transcription start site region 108679	348 bp upstream
Tssr108680	transcription start site region 108680	276 bp downstream
Tssr108681	transcription start site region 108681	307 bp downstream
Tssr108682	transcription start site region 108682	350 bp downstream
Tssr108683	transcription start site region 108683	1868 bp downstream