rs215755342 SNP Detail

Summary

• ID
  rs215755342
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72571537 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACACAC GAGTACATTA
  CTGGAGCTGG GGAGAGCAGT TGGGGAAGAG AGGCCAAAGC AAAGGCCAGT GAGAGTACTG
  AGTCACAGTA GCTGTAAGCT CTGCTGGGCT GTTAAATGCA CGGTGGGCTG AATGCTTATA
  TACTTTGGAA TGCTACAAGA TGGGCTGTAG AGAGGACTTA GTTAAGAGCA TTTGGTCTTT
  M
  AGAGAACTTA GGTTTGGTTC CCAGCACTCA CATGGTGGTT TACAGTCCTC AGAAATGATG
  CCCTCTTCTG ACCTCTGTGG AAGTCAGCTA TAGACATGGT GCACATAAGC ACATGCAGCA
  AGACACACAC TAAATAAACA AACAAACCAA CCAACCTTTA GAAAAAAGCC CAGTTCTCAG
  GTAACATTTA GAATATGGTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378023005	MGP_WTSI_9_72512062	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs215755342					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378023005	MGP_WTSI_9_72512062	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72571537 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22018	CpG island 22018	841 bp distal
Nedd4	neural precursor cell expressed, developmentally down-regulated 4	within coordinates
Rr682797	regulatory region 682797	1763 bp distal
Rr682798	regulatory region 682798	569 bp proximal
Rr682799	regulatory region 682799	606 bp proximal
Tssr86019	transcription start site region 86019	1843 bp downstream
Tssr86020	transcription start site region 86020	1787 bp downstream
Tssr86021	transcription start site region 86021	1732 bp downstream
Tssr86022	transcription start site region 86022	486 bp downstream
Tssr90495	transcription start site region 90495	985 bp upstream
Tssr90496	transcription start site region 90496	958 bp upstream
Tssr90497	transcription start site region 90497	929 bp upstream