rs215779249 SNP Detail

Summary

• ID
  rs215779249
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130550779 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCACCGCCC CCTCCCCCTG CCAAATGCAC
  AGGTCCCCAG GCTGCACCTC TTCCTGCATT GCCTCCCAGG GAAAGGGCTT CCTTCAGTGT
  ACAGGGCAGC CAGTGGTAAG TGAGGCCAGT CTAGCATCCC TCCTGAGAGG GGATGCCACA
  K
  AGCCTCCGTC AACCACTACT AGAATCCTAA AATGCATTCA CACAGGAGAC AAAAACATAC
  CCAGTCCTGA CCACCCAGCC AGCGAGACAT CACACAGATG CACCACCTTC ACGCAGTGCT
  CAGCCATCCT GATGCTTCTG CTACATCGTA                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321318867	CHEV_4_130379383	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215779249					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130550779 () rs orientation: forward

Symbol	Name	Function Class
Gm26716	predicted gene, 26716	926 bp downstream
Sdc3	syndecan 3	within coordinates
Tssr39279	transcription start site region 39279	1267 bp downstream
Tssr39280	transcription start site region 39280	800 bp downstream
Tssr39281	transcription start site region 39281	742 bp downstream
Tssr39282	transcription start site region 39282	421 bp downstream
Tssr39283	transcription start site region 39283	341 bp downstream
Tssr39284	transcription start site region 39284	133 bp downstream
Tssr39285	transcription start site region 39285	69 bp downstream
Tssr39286	transcription start site region 39286	2 bp downstream
Tssr39287	transcription start site region 39287	8 bp upstream
Tssr39288	transcription start site region 39288	43 bp upstream
Tssr39289	transcription start site region 39289	172 bp upstream
Tssr39290	transcription start site region 39290	179 bp upstream
Tssr39291	transcription start site region 39291	327 bp upstream
Tssr39292	transcription start site region 39292	404 bp upstream