rs215779318 SNP Detail

Summary

• ID
  rs215779318
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88193546 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGCTCTTG AAGGCCAGAG
  CTCAGCTGAG AATGGCTGGG GCTCCGTGAC GGGCTGCCCT CTGGAGAGGG ACAGCTCCTT
  AGAAGACAGC TCTTTGTTTT GACAGACTTT CCATTTCCCC TCAGGTCTTC TAAAGCTTCA
  CCTGGCCTTT CTGTCTTTTC TCTGCCGAAA GGTGAACTGG GCCTGCAGGT TTCTACATCC
  Y
  GACGGCTGCC TGGGCTCTTA GAACCACTTC TGTACACATC GACAGCCCAA GACTCTGTGG
  GGTCAGTCAG GCGAGGCTGT TTCCCAGAAG ACAGGCAATA TTCCTGATGA AGCTTGTCAA
  ATTTGATTTT AATCTCTCTA TACCACTTCT CTACTTGACT TGGAAGCATC CTTGGTCTGG
  GAACCACCTT GACGGGTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	DBA/1J	DBA/2J	LP/J	MA/MyJ	RF/J	SJL/J	SPRET/EiJ
ss350399244	MGP_WTSI_1_90162399	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	DBA/1J	DBA/2J	LP/J	MA/MyJ	RF/J	SJL/J	SPRET/EiJ
rs215779318					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350399244	MGP_WTSI_1_90162399	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88193546 () rs orientation: forward

Symbol	Name	Function Class
Hjurp	Holliday junction recognition protein	within coordinates
Tssr12870	transcription start site region 12870	959 bp upstream