rs215782869 SNP Detail

Summary

• ID
  rs215782869
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:98308293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGTGGGGC AGGGTGATGT
  AGGTCTCTAA CACCTTTGCC CCTGCTGGAA GTCCCCTGGT TTGCTACTGC AAAGCTGGGA
  TTTGACTGAG GCTCCTCCCC TGATACCCAC TGAGCCCTGA GCTCCTTTCA GCCTTTCACC
  AAGTTCCTAA CCCTATAGCA CAGTAGGCAG CATCCAGGGT CAGAGGAAGA AGCAATGGGG
  K
  AGAGGAGGCC CTAACCCCTC CAAGAGTGGG AAACTGGTGA CCTGCAGGCC CCAATTAGCA
  ATACCACAGC AGACTCCGGA AGGTCAGTCA GCCTCAGGCC TCTGTCAGCA TTCTGGGATT
  TCTCAGAGGC CAGGATACTC CCAGTGTCTC TTGTATGGTC TTCTGTCCAG AACTAGCTTG
  TGTTTGCTTC CAGGATCTGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323129391	CHEV_9_98326659	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215782869					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:98308293 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22178	CpG island 22178	547 bp distal
Rbp1	retinol binding protein 1, cellular	Intron
Rr685258	regulatory region 685258	1140 bp proximal
Tssr2984	transcription start site region 2984	1136 bp downstream
Tssr86646	transcription start site region 86646	1408 bp downstream
Tssr86647	transcription start site region 86647	1335 bp downstream
Tssr86648	transcription start site region 86648	1305 bp downstream
Tssr86649	transcription start site region 86649	1270 bp downstream
Tssr86650	transcription start site region 86650	910 bp downstream
Tssr86651	transcription start site region 86651	727 bp downstream