rs215795565 SNP Detail

Summary

• ID
  rs215795565
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95800307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATTGTTCC CCACAGCTGC
  TAACAGCTCA CAGAGAAGAG TGGCCCAGAC TCAGCCTGTT GAACACACAT GGAATCCTGA
  ACACTGGCCA AGATGTTCCC ATCCTCCTAA CCTTGGGGAA CAATGTGTCT AGTGACCGCC
  AGACCCCCCC AACCCTCCAC CCCCCCTACC CTCCCATCCC CCCCACCCCC CCACCTCCAC
  Y
  GATTCCCCTC CTAGTGACTT TTTGCAAAAA CCTCCAGGAA GCCCGGTAAT CTTTTAAATT
  TTTCTGTAGT TTGTTGTTGC TTTGTATGTA CCCTCAAAAA ACGATTTTTC TCATATATGA
  TCAAAATGCT CAGATCCCAT CATAGGATTC CTCTGTTCTG CAGACTCCTA AGGACCAACC
  CGTCCTCATA CAAATGATGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358909661	MGP_WTSI_3_95696918	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs215795565					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358909661	MGP_WTSI_3_95696918	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95800307 () rs orientation: forward

Symbol	Name	Function Class
Aph1a	aph1 homolog A, gamma secretase subunit	974 bp upstream
BC028528	cDNA sequence BC028528	990 bp upstream
Cpgi13526	CpG island 13526	706 bp proximal
Cpgi13527	CpG island 13527	1274 bp proximal
Rr78078	regulatory region 78078	106 bp distal
Rr78079	regulatory region 78079	93 bp proximal
Rr397845	regulatory region 397845	721 bp upstream
Tssr30653	transcription start site region 30653	925 bp upstream
Tssr30654	transcription start site region 30654	958 bp upstream
Tssr30655	transcription start site region 30655	1018 bp upstream
Tssr34557	transcription start site region 34557	1059 bp upstream
Tssr34558	transcription start site region 34558	1010 bp upstream
Tssr34559	transcription start site region 34559	150 bp upstream
Tssr34560	transcription start site region 34560	118 bp upstream