rs215821004 SNP Detail

Summary

• ID
  rs215821004
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:106478972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAAGGGAG GCAAGAGCCC
  AGCCTCAGGA TAAGTGAGGA AGAGTCCAAG GTCCAGACAT TCCGGAAAGC CTAGTCTACA
  GGGGACTCTG CTTTATCACA CAGGGCACCC CAGTTCAACC TGCACACTAG AAGCCAGGTG
  GGCCCCTGAG GGAGACAGCA TAGAGCAAGA AGACAGCAGT CTCAGAGCAG GGAGCAGGAC
  M
  GGCTGGACAC TGATCCAGAT GAGTGAAGCC CAGGCATACC CAGGGCAGGC ATTCATTGGT
  TTTACCTAGG TATCTCCTGG TCCCTCACAG GGAACTGCGT CCTGTCACAG AGGAGGAAAG
  CGGAAGTATA AGGGGTAGTG CTTTTTATTA GGGATGGAGA AACAGAAGTA GAACCTAGCA
  CCTAGGCACC TTAGTTTTTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321246845	CHEV_4_106294380	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215821004					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106478972 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14527	CpG island 14527	608 bp proximal
Rr596780	regulatory region 596780	167 bp proximal
Tssr38185	transcription start site region 38185	649 bp upstream
Tssr38186	transcription start site region 38186	711 bp upstream
Tssr38187	transcription start site region 38187	753 bp upstream
Ttc22	tetratricopeptide repeat domain 22	674 bp upstream