rs215821908 SNP Detail

Summary

• ID
  rs215821908
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:84128676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TATACCAAT TAAATAAGAT AAGTTCCCGA
  GCTTTGCACC CTTAGATAAG CACGGTCATC AGATAAGACA CTCCCTCTAT TTGCTTTTCT
  TCCTATGTCT TTGGGCTCTT ACtttgcaca gcacaagaaa aaaaaaagca ctttagagag
  R
  caacctaaac aatgggaaaa acaatgtttc aaaacatgta tcttgcaaag ggttgatata
  cagattatca atatataaat aataaataaT AATATAAGTA CATTTATATA CTATATAAAT
  GTGTTACACa taattatatg aattatatat                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319823980	CHEV_1_84147530	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215821908					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:84128676 () rs orientation: forward

Symbol	Name	Function Class
Pid1	phosphotyrosine interaction domain containing 1	within coordinates
Tssr12590	transcription start site region 12590	750 bp upstream
Tssr12591	transcription start site region 12591	467 bp upstream
Tssr12592	transcription start site region 12592	110 bp upstream
Tssr12593	transcription start site region 12593	74 bp upstream
Tssr12594	transcription start site region 12594	19 bp upstream
Tssr12595	transcription start site region 12595	348 bp downstream