rs215825609 SNP Detail

Summary

• ID
  rs215825609
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:129268774 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGTCTTT TAGACTGACC
  TTTGGGCGAC ACGGGAAACC TGGATGAAAT TTGTGCTCCA GAAAGCCATC TTTTCCCACT
  GCACACAGCC CTGATGGAGG CCTTAGTGTG TGGTCCTAGT AAAAACCCCA CCTCCTAACT
  TTGGGCTAAC GGGAAGAGAG CAAACTGTTC TTTGAATGGC GACTGTATTT CTTCGGAGGA
  Y
  GAACGGCCAT GTACAATTCT GGGAAGGTTT AGAATTAAGT CCAGAAACAA CTTAAGAGCT
  GAGCTTTAGA AATCTGTGTC GCCTCCAAAG TTCAGGCTGA AAGTTCACTC GCAGAGGAGG
  AAGAGTATTA TAGGAGCTTT TAGGGGGTGA TTAGGCCACC CTGGGGGGAG GGGTGCTGCC
  CTCGGGGACG GGATTAGCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321312481	CHEV_4_129052225	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215825609					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129268774 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14890	CpG island 14890	1848 bp proximal
Rr377176	regulatory region 377176	within coordinates
Rr600213	regulatory region 600213	956 bp distal
Rr600214	regulatory region 600214	303 bp distal
Rr600215	regulatory region 600215	1789 bp proximal
Tssr39144	transcription start site region 39144	347 bp upstream
Tssr43495	transcription start site region 43495	654 bp upstream
Tssr43496	transcription start site region 43496	1031 bp downstream
Zbtb8a	zinc finger and BTB domain containing 8a	Intron