rs215831449 SNP Detail

Summary

• ID
  rs215831449
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:92474089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGACCCTA TTTGTGTCTT
  TTGTTCTAAT GTTATTTAAA TTAAATAGAG CAGGGCGCTT ATACCCCACT TTAATCCCAG
  CACTAGGGAG GCAGAGGCAA GCAGATCTCT GTGAGTTTGA GGTCAGCCTG GTCTACAGAG
  TGAGTTCCAG GGCAGCCAAT GTTACACAGA GAAAGCTCCA AAAACCAAAC CCAAACAAAA
  T
  AAAAAAACAA AAAACCAAAA AAAAAAACCC AACAACAACA ACAAAAACAA AACAAAAAAA
  GGAGGGCTGA TGGGCTGGGA GATGCTCAGT AGATAAGGTG CTTGCTGCAC TAGCATGAAG
  ACCTGTGTTT GGACGCCCAG CACTTGTGTC AAATGCCAGT GGGCAGTAGG CACCTATACC
  CTATTCCTGG GGGTTGATAC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	ST/bJ	ZALENDE/EiJ
ss397353775	MGP_WTSI_16_92677446	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	ST/bJ	ZALENDE/EiJ
rs215831449					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397353775	MGP_WTSI_16_92677446	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:92474089 () rs orientation: forward

Symbol	Name	Function Class
D16Mit52	DNA segment, Chr 16, Massachusetts Institute of Technology 52	712 bp distal
Rr324625	regulatory region 324625	1290 bp proximal
Rr328209	regulatory region 328209	380 bp distal
Runx1	runt related transcription factor 1	within coordinates
Tssr142142	transcription start site region 142142	267 bp downstream