rs215841629 SNP Detail

Summary

• ID
  rs215841629
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93019635 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGT CCAGGACCTC TGCCGCTCCT
  M
  TCACCTCAAC TCACAGCCTG GACTT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320395091	CHEV_2_93029447	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215841629					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93019635 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
C230071H18Rik	RIKEN cDNA C230071H18 gene			1617 bp upstream
Cpgi11943	CpG island 11943			296 bp distal
Rr561109	regulatory region 561109			1696 bp distal
Rr561110	regulatory region 561110			1852 bp distal
Rr561111	regulatory region 561111			within coordinates
Rr561112	regulatory region 561112			303 bp distal
Rr561113	regulatory region 561113			87 bp distal
Trp53i11	transformation related protein 53 inducible protein 11			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Tssr18979	transcription start site region 18979			1737 bp downstream
Tssr18980	transcription start site region 18980			1720 bp downstream
Tssr18981	transcription start site region 18981			1649 bp downstream
Tssr18982	transcription start site region 18982			1507 bp downstream
Tssr18983	transcription start site region 18983			1821 bp upstream