rs215842786 SNP Detail

Summary

• ID
  rs215842786
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164173809 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATAG CAGAGTCTTC ACTCCTCTTC
  C
  AACATCTCAG CCTCTCTCCT CATAC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320605464	CHEV_2_164157625	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215842786					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164173809 () rs orientation: forward

Symbol	Name	Function Class
Svs5	seminal vesicle secretory protein 5	876 bp upstream
Tssr744	transcription start site region 744	1440 bp upstream
Tssr745	transcription start site region 745	1483 bp upstream
Tssr746	transcription start site region 746	1494 bp upstream
Tssr747	transcription start site region 747	1507 bp downstream
Tssr748	transcription start site region 748	1528 bp upstream
Tssr749	transcription start site region 749	1560 bp upstream
Tssr750	transcription start site region 750	1573 bp upstream
Tssr751	transcription start site region 751	1627 bp upstream
Tssr752	transcription start site region 752	1696 bp upstream
Tssr753	transcription start site region 753	1703 bp upstream
Tssr21562	transcription start site region 21562	834 bp upstream
Tssr21563	transcription start site region 21563	851 bp upstream
Tssr21564	transcription start site region 21564	870 bp upstream
Tssr21565	transcription start site region 21565	895 bp upstream
Tssr21566	transcription start site region 21566	905 bp upstream
Tssr21567	transcription start site region 21567	919 bp upstream
Tssr21568	transcription start site region 21568	929 bp upstream
Tssr21569	transcription start site region 21569	1406 bp upstream
Tssr21570	transcription start site region 21570	1468 bp upstream
Tssr21571	transcription start site region 21571	1499 bp upstream
Tssr21572	transcription start site region 21572	1516 bp upstream
Tssr21573	transcription start site region 21573	1545 bp upstream
Tssr21574	transcription start site region 21574	1609 bp upstream
Tssr27433	transcription start site region 27433	1464 bp downstream
Tssr27434	transcription start site region 27434	1487 bp downstream
Tssr27435	transcription start site region 27435	1515 bp downstream
Tssr27436	transcription start site region 27436	1534 bp downstream
Tssr27437	transcription start site region 27437	1555 bp downstream
Tssr27438	transcription start site region 27438	1585 bp downstream
Tssr27439	transcription start site region 27439	1599 bp downstream
Tssr27440	transcription start site region 27440	1609 bp downstream
Tssr27441	transcription start site region 27441	1664 bp downstream
Tssr27442	transcription start site region 27442	1672 bp downstream
Tssr27443	transcription start site region 27443	1735 bp downstream
Tssr27444	transcription start site region 27444	1744 bp downstream