rs215846614 SNP Detail

Summary

• ID
  rs215846614
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:43019363 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAGCTTTC AGAAGATGGT
  CAGCAGAGGA CTGAATAACT ACTGTTTCAA TGATGAAAAT CTCTAATCAC TCACAAGGCT
  CTGATTTTAT TTTTTAATAT CCTGACAAAA GGCTCATTAT AACTTCACCA CTAAGAGTCT
  ACCTATGGAA TGCCTTCAGT AGAGCCAAGC AAACCAAGGT CCCTTCCCTA GGTCACACAT
  W
  GCCCTTTACC TAGGAAAGTG GCACCAGTGA CCCAATCCCT GGACATGCAG TTTCCAGTGG
  AACATCCTCG AGGCCACATT TATCCTCTTA TTCACTGCTT CAATGTGCTT ATGAAGGGCC
  TGCTGTACCC AGGACTGTTG TAAGCATCAG AAATCCACTG TCTAGCTGGT TATGGTAGCT
  TCCACCTTTA CTCCCAGCAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377380685	MGP_WTSI_9_42916151	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs215846614					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377380685	MGP_WTSI_9_42916151	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:43019363 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21624	CpG island 21624	1370 bp distal
Rr677325	regulatory region 677325	1591 bp distal
Rr677326	regulatory region 677326	618 bp distal
Rr677327	regulatory region 677327	154 bp distal
Tlcd5	TLC domain containing 5	582 bp downstream
Tssr89077	transcription start site region 89077	1972 bp upstream
Tssr89078	transcription start site region 89078	1900 bp upstream
Tssr89079	transcription start site region 89079	1872 bp upstream
Tssr89080	transcription start site region 89080	1045 bp upstream
Tssr89081	transcription start site region 89081	959 bp upstream
Tssr89082	transcription start site region 89082	926 bp upstream