rs215848379 SNP Detail

Summary

• ID
  rs215848379
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:184545520 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGGCTCCAT GTTAACTTAG
  TGTTTGTACT GTTACTGCAA GCTAGTGCAT CATCCTGTGC TACCGTGAGC CTTTAAGACT
  GAGTTCATGG TTTCTCCTTG TTCCTTCTTC CGAAGGAAGA TTCCATTCCT TTAAGGTCCA
  CTCTCTTGTA GAATTGGAAG AATTCACAAT TATAGATAAG TTCTACCTGT CTTGATAGGA
  W
  CAGAATGAAA TGTAAAGCCA CAGTCTATGA ACAAAATAAC CCCATGACCT CTGAAGTCAT
  TTCTGTATGT AAGCATACTT CTATAACAGC AAGGTAAACA ATAATGAAAC CAAACTCAGC
  AGGGCTCAAC AGCCAGGCCA AGACCGGCCA ACAGGCTTTC GTGAGCATGC GAGCACATCA
  GATATGTGCA CATTCCCTGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320169584	CHEV_1_186637202	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215848379					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184545520 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1161	CpG island 1161	1986 bp distal
Gm70890	predicted gene, 70890	461 bp downstream
Mtarc2	mitochondrial amidoxime reducing component 2	mRNA-UTR
Rr425290	regulatory region 425290	1389 bp distal
Rr425291	regulatory region 425291	883 bp distal
Rr425292	regulatory region 425292	954 bp distal
Rr425293	regulatory region 425293	806 bp distal
Rr425294	regulatory region 425294	1122 bp proximal