rs215866730 SNP Detail

Summary

• ID
  rs215866730
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:147216483 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGAGTGGGG CTTGAACCTA GGAGCAAAGC
  CAAAGCCCTT AATCATATAT TTTTATAGTA ACAAACAAGA GTACAACTTC CTTGGATTGC
  TGCCCCTACC CCAAGAATAT TGTTTGGAAA CCTTTTGTTT TTCTGTGCCC AGTGACTAGG
  Y
  TGGCTTTGTT TCTACGTTAA TGTCACCCAA AAGAAGACAG GACAGGAGAA AGAGATGCTG
  GGACTGGTGT TGGGACTGGT GGTGTTTTTA GTAATTAAAG ACTAGGCTTA TCTCTCAGCC
  AGATATGCCC AACACTCCTT AATGTACCTC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320550004	CHEV_2_147200299	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215866730					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:147216483 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12389	CpG island 12389	666 bp distal
Pax1	paired box 1	within coordinates
Tssr20631	transcription start site region 20631	700 bp downstream
Tssr20632	transcription start site region 20632	644 bp downstream
Tssr20633	transcription start site region 20633	608 bp downstream
Tssr20634	transcription start site region 20634	515 bp downstream
Tssr20635	transcription start site region 20635	965 bp upstream