rs215869022 SNP Detail

Summary

• ID
  rs215869022
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:37857910 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTAATATT TGTCTTTTTA
  TAATAATCAT ATATGTTCCT CACTTTTTGT TGTTCTTTGG ATGAAAGTTA TAGTAGTAGG
  GCTAACCGTG TGTGTGTGTT TGTGTCTGTG TGTGTGTCTC ACTTAAACAC TCATCTAGTT
  TAAAGTTCAA TTATTGACAG GCTTGGTAGT GCACACTTTA ATCCCAGCAC CAGGATGTAC
  S
  AGCCTGATCT ACCTAGTGAG TTCCAGGACA GACAGACACA CACACACCCT CACACCCTCC
  TTTCTCCTCT CTCCTTTCTC TCTCTTCTCT CTCTCTATCT CTCTCTCTCT CTCTCTCTCT
  CTCTCTCCCC ACACACACAT ATATGGAAAG AGGGCAATAA GAGTATTACT TCTAATTGTG
  TCTTTATCTG TCCCTTCCAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325585653	CHEV_18_37884511	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215869022					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:37857910 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9937	CpG island 9937	884 bp proximal
Cpgi9938	CpG island 9938	1624 bp proximal
Gm37165	predicted gene, 37165	within coordinates
Gm37388	predicted gene, 37388	within coordinates
Gm38666	predicted gene, 38666	within coordinates
Gm38667	predicted gene, 38667	within coordinates
Gm53048	predicted gene, 53048	within coordinates
Pcdha4b	protocadherin alpha 4B	within coordinates
Pcdhga1	protocadherin gamma subfamily A, 1	within coordinates
Pcdhga2	protocadherin gamma subfamily A, 2	within coordinates
Pcdhga3	protocadherin gamma subfamily A, 3	within coordinates
Pcdhga4	protocadherin gamma subfamily A, 4	within coordinates
Pcdhga5	protocadherin gamma subfamily A, 5	within coordinates
Pcdhga6	protocadherin gamma subfamily A, 6	within coordinates
Pcdhga7	protocadherin gamma subfamily A, 7	within coordinates
Pcdhga8	protocadherin gamma subfamily A, 8	849 bp upstream
Pcdhgb1	protocadherin gamma subfamily B, 1	within coordinates
Pcdhgb2	protocadherin gamma subfamily B, 2	within coordinates
Pcdhgb4	protocadherin gamma subfamily B, 4	within coordinates
Rr536311	regulatory region 536311	713 bp proximal
Tssr150727	transcription start site region 150727	864 bp upstream