rs215873606 SNP Detail

Summary

• ID
  rs215873606
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48047261 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCCTTCC TTTATAACCT
  TTTACCTAAT CAATTACAAC AGTATCTGCT ACACCCCAGG AAACGTCCCG TGATCTTATT
  TAAATTTCTC AGCAGTCCTT TGAAGATAAC TGCGGGACTC ACCAAAACAA AAGTATGGCT
  ATGGTAAAAG ACAAGGAGAA GCCCTTGCCC AGTTTCTCTG TCAACTTCCT CTTAATCCCT
  R
  TGTTTTAAAT CTACATTAAA AAAAAATATA TATATATATA TATATATTTA AACCAGGCAG
  TAGTGGTATA CACTTTTAAT CCCAGCACTT GAAAGACAGG TGGATCTCTG TGAATTTAAG
  GCCAGACTGT CTACAAATCT AGTTGTAGAA CAGCCAAGGC TACACAAAGA AACCTTGTGT
  TAAAGAACCA TATATATATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398353094	MGP_WTSI_17_47873285	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs215873606					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398353094	MGP_WTSI_17_47873285	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48047261 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9270	CpG island 9270	551 bp proximal
Pgc	progastricsin (pepsinogen C)	1858 bp downstream
Rr405329	regulatory region 405329	479 bp upstream
Rr528107	regulatory region 528107	204 bp proximal
Rr528108	regulatory region 528108	652 bp proximal
Rr528109	regulatory region 528109	686 bp proximal
Rr528110	regulatory region 528110	1102 bp proximal
Tfeb	transcription factor EB	701 bp upstream
Tssr145044	transcription start site region 145044	1999 bp downstream
Tssr145045	transcription start site region 145045	1982 bp downstream
Tssr145046	transcription start site region 145046	1931 bp downstream
Tssr145047	transcription start site region 145047	1915 bp downstream
Tssr145048	transcription start site region 145048	1895 bp downstream
Tssr145049	transcription start site region 145049	700 bp upstream
Tssr145050	transcription start site region 145050	789 bp upstream
Tssr145051	transcription start site region 145051	838 bp upstream
Tssr145052	transcription start site region 145052	1809 bp upstream
Tssr148481	transcription start site region 148481	1972 bp upstream
Tssr148482	transcription start site region 148482	1855 bp upstream
Tssr148483	transcription start site region 148483	1441 bp downstream