rs215880512 SNP Detail

Summary

• ID
  rs215880512
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:8617523 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTTATAAT GAAAGAGTTA
  TTTGAATTTA TTTAAGTAAA AATAACAAAA TTAAGTAGTT AAAAACGTTC TGAGTTTCCA
  CATTTGTTAG TCACAATCTA AGAAGAAAAT TCTGAAATAT CTTTGTGCTT ACTTTCCTTC
  ATGTGAATCA TGAAGCCACT GCATTCACAT TCAAGCACCT TCGTTAGGGC AGCCATGTTT
  R
  TGTATACTAT ATCCATGTAT GCATATAATA TGCACGAAGC CACGTTTGTG TATGGATATC
  ATATGTTTAT GTATATTACA AGCCTTTTAT TTTGGAAACT TTTGTGTTTA GAACTGAATC
  ATTTCCTTTC TCATCAGGGT ACAGCTAGAT GTGAGACAAA GCTAAAATGT CTCCCTTTAA
  TTTTTAAACT ATTGTTCCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321463547	CHEV_5_8567523	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215880512					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:8617523 () rs orientation: forward

Symbol	Name	Function Class
Gm72884	predicted gene, 72884	within coordinates
Rr130297	regulatory region 130297	within coordinates
Rundc3b	RUN domain containing 3B	within coordinates
Tssr45118	transcription start site region 45118	413 bp downstream
Tssr45119	transcription start site region 45119	400 bp downstream