rs215880546 SNP Detail

Summary

• ID
  rs215880546
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116486420 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTGTGTA AGGGTGTCTG
  AACCCTTGGA ACAAGAACTA CAGATAGTTT GTTCCTCTCC AAGAATAGCC AGTGCTCTTT
  AACCGGTGAG CCATCTCTCC AGTCCTAGCA CACACCTTTA ATCTCAGCAC TCAGGAGGCA
  GACTGGTCTC CCTGGATTTG AACCCAGAAT GTTTTACAGA GCTAGTTCTA AGACAGCACA
  Y
  CTGTTTCAGC ACTCCAAAGG CAGAAGCTGT TGAGGCAACC TAATCTATGT AAGGAATTCC
  AACACAGCCA AGGCTTCATA GTGAGATCTT GTTTCCAAAA AAAAAAAAAA ATTTTGTCCG
  GCAGTGGTGG CACATGCCTT TAGTCCCAGC ACTTGGGAGT TCGAAGCCAG CCTGGTCTAC
  AGAGTGAGTT CCAGGACAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362953181	MGP_WTSI_4_116301828	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs215880546					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362953181	MGP_WTSI_4_116301828	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116486420 () rs orientation: forward

Symbol	Name	Function Class
A430091L06Rik	RIKEN cDNA A430091L06 gene	536 bp downstream
Cpgi14636	CpG island 14636	1709 bp distal
Nasp	nuclear autoantigenic sperm protein (histone-binding)	1282 bp upstream
Rr84401	regulatory region 84401	220 bp distal
Rr84402	regulatory region 84402	581 bp proximal
Rr84403	regulatory region 84403	981 bp proximal
Rr99808	regulatory region 99808	619 bp distal
Rr398404	regulatory region 398404	1528 bp downstream
Rr398405	regulatory region 398405	1059 bp downstream
Tssr42894	transcription start site region 42894	1826 bp upstream
Tssr42895	transcription start site region 42895	1720 bp upstream
Tssr42896	transcription start site region 42896	1315 bp upstream
Tssr42897	transcription start site region 42897	1267 bp upstream
Tssr42898	transcription start site region 42898	1235 bp upstream