rs215880794 SNP Detail

Summary

• ID
  rs215880794
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5846737 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGGAGAC CTTGTAACAG
  GATTCTGGAA AAGCTGGGGA AACTGGTTGC CCGCTTTCCC CCTTTTCCCT CCCCTGCAAG
  CACAACTTGA GGTTTGGGCT GGTAACCGCT GCTATAAAAA CAGCCTTTTT TCCAGATGTT
  AAAACAAGCC CAGGGCCTCT CAAGTATTTT CTTTGGATGC TTCAATTCCA ACAAGGTGTT
  R
  CGGTAGGGTA GTCCCCACTG CTAATCAAAA CCGACCATGA TACCACTTTG GTCTCGATAC
  AATACTGCTT GCTTGATTCT TGCCACACAG GAAGGCTCCG CTGTCCTACA TTAAGCCTTC
  AGTGCCTTTA GTGAGGGGTA CCTGAAAAAT CTTAAAAAAA GGCTTAGCGC CCACCTCACC
  CCTCCACCCC AAGGCCAACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401662564	MGP_WTSI_19_5796709	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs215880794					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401662564	MGP_WTSI_19_5796709	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5846737 () rs orientation: forward

Symbol	Name	Function Class
Malat1	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	within coordinates
Mascrna	Malat1-associated small cytoplasmic RNA	728 bp upstream
Rr543161	regulatory region 543161	745 bp proximal
Rr543162	regulatory region 543162	1851 bp proximal
Tssr5415	transcription start site region 5415	125 bp downstream
Tssr5416	transcription start site region 5416	601 bp downstream
Tssr157645	transcription start site region 157645	328 bp upstream
Tssr157646	transcription start site region 157646	226 bp upstream
Tssr157647	transcription start site region 157647	139 bp upstream
Tssr157648	transcription start site region 157648	2 bp downstream
Tssr157649	transcription start site region 157649	102 bp downstream
Tssr157650	transcription start site region 157650	161 bp downstream
Tssr157651	transcription start site region 157651	215 bp downstream
Tssr157652	transcription start site region 157652	352 bp downstream
Tssr157653	transcription start site region 157653	469 bp downstream
Tssr157654	transcription start site region 157654	512 bp downstream
Tssr157655	transcription start site region 157655	549 bp downstream
Tssr157656	transcription start site region 157656	579 bp downstream
Tssr157657	transcription start site region 157657	701 bp downstream
Tssr157658	transcription start site region 157658	753 bp downstream
Tssr157659	transcription start site region 157659	856 bp downstream
Tssr157660	transcription start site region 157660	1009 bp downstream
Tssr157661	transcription start site region 157661	1030 bp downstream
Tssr157662	transcription start site region 157662	1135 bp downstream
Tssr157663	transcription start site region 157663	1194 bp downstream
Tssr157664	transcription start site region 157664	1316 bp downstream
Tssr157665	transcription start site region 157665	1323 bp downstream
Tssr157666	transcription start site region 157666	1348 bp downstream
Tssr157667	transcription start site region 157667	1601 bp downstream
Tssr157668	transcription start site region 157668	1648 bp downstream
Tssr157669	transcription start site region 157669	1663 bp downstream
Tssr157670	transcription start site region 157670	1683 bp downstream
Tssr157671	transcription start site region 157671	1700 bp downstream
Tssr157672	transcription start site region 157672	1749 bp downstream
Tssr157673	transcription start site region 157673	1766 bp downstream
Tssr157674	transcription start site region 157674	1796 bp downstream
Tssr157675	transcription start site region 157675	1815 bp downstream
Tssr157676	transcription start site region 157676	1826 bp downstream
Tssr157677	transcription start site region 157677	1848 bp downstream
Tssr157678	transcription start site region 157678	1860 bp downstream
Tssr157679	transcription start site region 157679	1897 bp downstream
Tssr157680	transcription start site region 157680	1952 bp downstream
Tssr157681	transcription start site region 157681	1981 bp downstream
Tssr157682	transcription start site region 157682	1999 bp downstream