rs215884308 SNP Detail

Summary

• ID
  rs215884308
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:43628502 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGTTTGCT TTGGGTTTGT
  GTGTGTGTGT GTATGTGTGT GTGTGTGTGT TTGGGATTTT TAGTTGTTTG CTTTTGTTTT
  TTTGTTTGTT TGTTTCTTTG TTTGTTTGTT TTTTACTACA GGCCTTGGGA AAGGTTGACA
  GTTTCTCGCT AAGAGTGCAT TTTTACACTG GACTCACACC TACTAGTGCT GGGGTTGGGG
  W
  CGACGGCTGA GCACTGATTC GTGGTGGCCA CTTCTCATCT GCTTCTGGAA AAGGACAGAG
  AGGTTTCCCT GCCTTGAAAG CTGTTTAACA TTGGAGTCTA CCATTGGGTT TCAATATGAG
  ACCAGTGATT GTAATTTTAG CGCCTCAGCA AGAACTCATT TTCAGTTTCT CTTCAACTTT
  TGCTCTGCCT CAAGATCAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320269123	CHEV_2_43594010	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215884308					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:43628502 () rs orientation: forward

Symbol	Name	Function Class
Rr556296	regulatory region 556296	269 bp distal
Rr556297	regulatory region 556297	within coordinates
Tssr17595	transcription start site region 17595	1034 bp upstream
Tssr23873	transcription start site region 23873	185 bp downstream
Tssr23874	transcription start site region 23874	526 bp downstream