rs215888747 SNP Detail

Summary

• ID
  rs215888747
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:142203259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGAGCATGA GCTGCGCAGT AAAAGGTCTG
  AGACTGGGGC TCTAACCAGC GCTCCCATTG TCGGGAAGTG AATTCCCAGA CAGCAAGGCT
  CTATATGTGG GCCGATGCTT GTCCTCATTG GAGCTTGGGA CAAATTCACA GCCAGAGCTG
  M
  gagagagaga gagagagaga gagagagaga gagagagaga gagagagaga gagagagaga
  gaACTCCAAG GCACACAGGA AGAGGTTTGC TGACAGCAGT GAGCATTTTC GCTGCACTGC
  CATCTCTTAA AGGTTCCGTG TTTGCTTTTC                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321002360	CHEV_3_142160462	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215888747					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142203259 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gbp5	guanylate binding protein 5			Intron
				Noncoding-Transcript-Variant
Rr398084	regulatory region 398084			697 bp downstream
Rr586446	regulatory region 586446			588 bp distal
Rr586447	regulatory region 586447			within coordinates
Rr586448	regulatory region 586448			1497 bp proximal
Tssr32047	transcription start site region 32047			709 bp downstream
Tssr32048	transcription start site region 32048			694 bp downstream
Tssr32049	transcription start site region 32049			668 bp downstream
Tssr32050	transcription start site region 32050			606 bp downstream
Tssr32051	transcription start site region 32051			559 bp downstream