rs215905280 SNP Detail

Summary

• ID
  rs215905280
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142133336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCCGAGGG TTGGCCATCA
  CATGTAAGCT ATTCACTGGT GTGGTGGCAG TTGGTCTCTG TCTCCCATCA CCCCCCACAT
  CACCCTTGCT ATACTCCCCT ATACTTCCCA CTATATCCTC CCCACTACAC CCCTGCTATA
  TCCCCCCTGT CATCCTCCCC ACCATACCCC TTGCCATACC CCCCACCATA CTTCCCCTAT
  R
  GCCCCCATAC TCTCTGCTAT ACCCCCACTA TACCCTCCCT GCTATACCCC CACTATACCC
  CCGCTATGTC CCCCACTATA CCCACACTAT ACCGCCCCAC TACACCCCCA TTATACCCCC
  ACTATGCCCC TCCTGCCATG CCCCCCACTA TGTCCCCCAT TATGCCCCCG CTATGCCCCC
  GCTATACCCC CACTATAACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss373453203	MGP_WTSI_7_149765504	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs215905280					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373453203	MGP_WTSI_7_149765504	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142133336 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19965	CpG island 19965	713 bp proximal
Gm56421	predicted gene, 56421	1681 bp downstream
H19	H19, imprinted maternally expressed transcript	1453 bp upstream
Rr27	regulatory region 27	549 bp proximal
Rr370601	regulatory region 370601	649 bp upstream
Rr658231	regulatory region 658231	964 bp distal
Rr658232	regulatory region 658232	319 bp distal
Rr658233	regulatory region 658233	271 bp proximal
Rr658234	regulatory region 658234	611 bp proximal
Rr658235	regulatory region 658235	707 bp proximal
Tssr2461	transcription start site region 2461	1673 bp downstream
Tssr70222	transcription start site region 70222	1945 bp downstream
Tssr70223	transcription start site region 70223	1803 bp downstream
Tssr70224	transcription start site region 70224	1758 bp downstream
Tssr70225	transcription start site region 70225	1720 bp downstream
Tssr70226	transcription start site region 70226	1625 bp downstream
Tssr70227	transcription start site region 70227	1543 bp downstream
Tssr70228	transcription start site region 70228	1530 bp downstream
Tssr75834	transcription start site region 75834	1756 bp upstream
Tssr75835	transcription start site region 75835	1724 bp upstream
Tssr75836	transcription start site region 75836	1702 bp upstream
Tssr75837	transcription start site region 75837	1679 bp upstream
Tssr75838	transcription start site region 75838	1609 bp upstream
Tssr75839	transcription start site region 75839	1587 bp upstream
Tssr75840	transcription start site region 75840	1558 bp upstream
Tssr75841	transcription start site region 75841	1531 bp upstream
Tssr75842	transcription start site region 75842	1514 bp upstream
Tssr75843	transcription start site region 75843	1508 bp upstream
Tssr75844	transcription start site region 75844	1478 bp upstream
Tssr75845	transcription start site region 75845	1445 bp upstream