rs215918206 SNP Detail

Summary

• ID
  rs215918206
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:7281469 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCTGGGCCC TAGACGCACT
  ACAGCTCCCA TGAGCGCCTG GGCCCGACTT CCTGTCCAAA ATGGAGGCAC TTCCTGTATC
  TCACAAAGTA CAACCTCCCG GGGATTGACC GATGGAAAAC GCGACCGCCT CGCGGGGTCG
  GATCCACCAG CCTGGCCGGC TTCCCCTCAC CCTGGCCGGG ATGAAGCAGG CACATCCGAC
  C
  CCTTGGAGGA AGTTTTTTCC GGCGTGCTCT CTGTCGCCAC CTGGTGGTGA CAGAGAAGAA
  TGCGGTCATC GTGACCGTTC GATTTTCCTT TTTTCAAATG ACACTTGTTT TTGGTTTTTG
  ATACTTTTTA AAAGAATCTA CGTGCACATT CATTTTTCTT TTATTATCAT TGATGGCTCA
  CCACTCTTTG CATATGTGTG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	ST/bJ
ss370610679	MGP_WTSI_7_7231181	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	ST/bJ
rs215918206					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370610679	MGP_WTSI_7_7231181	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:7281469 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18306	CpG island 18306	within coordinates
Gm45844	predicted gene 45844	181 bp upstream
Tssr64464	transcription start site region 64464	470 bp downstream
Tssr70610	transcription start site region 70610	425 bp upstream
Tssr70611	transcription start site region 70611	384 bp upstream