rs215924860 SNP Detail

Summary

• ID
  rs215924860
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:63285522 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAGGAGCC TAGAAAACCC
  AGGAAGACAC GGATCTACGG CTGGGGGCTG TCCGTAAAAC AATTTAAGGT TTGATCATGC
  AGAAAAGGCG GTGAAGGACA AGACGGCAGC ACCAGCTTGT CAAGTTATAT ACCTTTTACT
  ATCCGCGGGT TTGTTACATT AAATCGGCAA GAGCCAGGCA AGACCTTTTT ATTAAAAAAA
  R
  AAAAAAAAAA AAAAAAGCAT GTTTTTATGC CCCTTCTTCC AATTAACAGT TCCAAAATAC
  CACTATTTTT TCTCCCACGT TAGCAAAGTG TGCATGAATT TTTCAGTGAG GTCCTTTACC
  CTAACCAGTG ACCTACAGTA CCAAGCAATC TCCTACTCAA AAGCAACAGT AAAGAAACTC
  AATGGAGAGC GCTTAACTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	NOD/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	ZALENDE/EiJ
ss377820309	MGP_WTSI_9_63226047	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	A	G	G	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	NOD/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	ZALENDE/EiJ
rs215924860					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	A	G	G	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377820309	MGP_WTSI_9_63226047	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:63285522 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21914	CpG island 21914	101 bp distal
Map2k5	mitogen-activated protein kinase kinase 5	mRNA-UTR
Rr401444	regulatory region 401444	195 bp downstream
Rr680973	regulatory region 680973	within coordinates
Tssr90089	transcription start site region 90089	474 bp upstream
Tssr90090	transcription start site region 90090	411 bp upstream
Tssr90091	transcription start site region 90091	326 bp upstream
Tssr90092	transcription start site region 90092	260 bp upstream