rs215929285 SNP Detail

Summary

• ID
  rs215929285
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:58279189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    cctacacag gtgcttactg ttacctaagt
  ccccagttta cctcagggtc actcctgatg tagtgcattc caCCATGACA GTGTAACATA
  GAGGACAGTC TTGTCCTGAA AGACGTCTGT GAGCACCTGC TCAGGCTTTG CTTGTGCCCA
  R
  CTCTCTGGCA GCCACTGGTC TCTCTTTTTT TTTTTTTAAC TGCCTCTATA AACTTTCATA
  TCTCAGAATT TCTGctttct ctccctctca ctttctcagt cagtctctgt gtctttctgt
  ctgtcttctc tgtctcccAG AGGCCTCACA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323690074	CHEV_11_58201865	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215929285					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58279189 () rs orientation: forward

Symbol	Name	Function Class
Lypd8	LY6/PLAUR domain containing 8	within coordinates
Tssr3508	transcription start site region 3508	1944 bp downstream
Tssr101739	transcription start site region 101739	1602 bp downstream
Tssr101740	transcription start site region 101740	1557 bp downstream
Tssr101741	transcription start site region 101741	1539 bp downstream
Tssr101742	transcription start site region 101742	1725 bp upstream
Tssr101743	transcription start site region 101743	1794 bp upstream
Tssr101744	transcription start site region 101744	1876 bp upstream
Tssr101745	transcription start site region 101745	1905 bp upstream
Tssr108157	transcription start site region 108157	1559 bp upstream
Tssr108158	transcription start site region 108158	1527 bp upstream
Tssr108159	transcription start site region 108159	1788 bp downstream
Tssr108160	transcription start site region 108160	1801 bp downstream
Tssr108161	transcription start site region 108161	1866 bp downstream
Tssr108162	transcription start site region 108162	1895 bp downstream