rs215932350 SNP Detail

Summary

• ID
  rs215932350
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:65755239 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAAAGGAA CTTGGGGAGG
  AAAGGACTTT TTGGGGGAGA GGACAGGGCA AGAGGCGTAT GTTTCCCATC TTGGTCCATC
  ATTGAAAAAT GTCAGGGCCA AGAGCTCAAG GCAGGAACTT GGAAGCAGGA GCCAGAACAA
  AACACTGCTT GCTCCCTATG GCTTGCTCAG CTTGCCTTTT TAAAAGACAA CCTAGGACCA
  Y
  GTGACCCAGG GATGTCACCA TCTACAATGT GCTAGACCCT CCCATTCCAA TCTTTAATCC
  AGAAAAATGA TCCACAGACT TCCTACAGAG CAATCTGATG GGGACATTTT CTCAATTTAA
  ATTCCAGCTT CCCAGAGGGC TCAAGCTTGT GTCAAGTTAA CAAAAAAAAC CTAACCAGGA
  TAACTGGTCT ATTAAGGACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321809795	CHEV_6_65728249	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215932350					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:65755239 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17503	CpG island 17503			386 bp proximal
Gm16838	predicted gene, 16838			within coordinates
Prdm5	PR domain containing 5			mRNA-UTR
				Noncoding-Transcript-Variant
Rr631490	regulatory region 631490			243 bp proximal
Rr631491	regulatory region 631491			984 bp proximal
Tssr56854	transcription start site region 56854			739 bp upstream
Tssr61222	transcription start site region 61222			1381 bp downstream
Tssr61223	transcription start site region 61223			1434 bp downstream
Tssr61224	transcription start site region 61224			1442 bp downstream
Tssr61225	transcription start site region 61225			1459 bp downstream
Tssr61226	transcription start site region 61226			1518 bp downstream