rs215938211 SNP Detail

Summary

• ID
  rs215938211
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25404333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGAACTGG TTCTGCGCAT
  GTCCTCGTTG CTTAAAGGAC TTGGATGGCG CTCTTGGCGC TGAGACACAA GAACACAGCA
  CAAAGTTGGA GGCTTGAAAT CTGATCTTTG CCGAACACCA ATGCCCAGTG ATTACGTCCA
  TAGAACTTTT GAGGTTCCTA GAAAAGGTTT TGGGTGCACC TTATGCTCTT GAGTTATGAT
  K
  TGTTCATACA GCCTAATCAT GTTTCCAGCG TTCATCTGGT GGAGGTGTTA CCTGCAGTTC
  ATTCGCTTTC CGAGACAGAC TAACTGCTGA AGTGTAATTA CCTATATGTG TGCAACATCA
  GTTGAAGCTA TTTTAAAAAC TAACAAATGG AAAATACATT TGGTAAAGTC TAATGAACTC
  AATTTTCTCA CCTCCCCTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397871724	MGP_WTSI_17_25322304	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs215938211					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397871724	MGP_WTSI_17_25322304	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25404333 () rs orientation: forward

Symbol	Name	Function Class
4930568E02Rik	RIKEN cDNA 4930568E02 gene	790 bp upstream
Cpgi8755	CpG island 8755	63 bp distal
Rr370183	regulatory region 370183	778 bp downstream
Rr523507	regulatory region 523507	1835 bp distal
Rr523508	regulatory region 523508	1931 bp distal
Rr523509	regulatory region 523509	300 bp distal
Tssr5037	transcription start site region 5037	796 bp downstream
Tssr143142	transcription start site region 143142	757 bp downstream
Tssr143143	transcription start site region 143143	741 bp downstream
Tssr146818	transcription start site region 146818	957 bp upstream
Tssr146819	transcription start site region 146819	891 bp upstream
Uqcc4	ubiquinol-cytochrome c reductase complex assembly factor 4	within coordinates