rs215939817 SNP Detail

Summary

• ID
  rs215939817
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81068041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTCTTATC TTTCCTGGTA
  ACTAATATAA GACCCCACAT AGTAGTGGAT CTCCAAGGTT CTTTCTGCAC ATCCTGTGAG
  CACATCAAGT TCCTTCCTGC CACAAGGCCT TTGCCTGTAC TGTCAGTACT CTCGGATCTC
  CTACGTTCAT ACGAGTGTAC ATGTGAGTAT AGGTCACATA GGCTCTCTCT TCCTGACAAC
  R
  GGTTTGTTCT AGGCATTTCC CACCATGGAA ATGCGTGCCT ACTGTCTCAC TGAGCACGAG
  GCTCATTCAC CTGTCGGTGC GGCCATAACT CCCACCCACT TTCAGAACCT TCCATCTACC
  CACACTATGC CCATCACCTC CCTACTTCTT ATATCTTACT TCCTGTGTCT GTCAGTCTGA
  GGACTCCAGG AACCTCCTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381033028	MGP_WTSI_10_80694952	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs215939817					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381033028	MGP_WTSI_10_80694952	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81068041 () rs orientation: forward

Symbol	Name	Function Class
Atcay	ataxia, cerebellar, Cayman type	1374 bp upstream
Cpgi1955	CpG island 1955	1475 bp distal
Cpgi1956	CpG island 1956	617 bp proximal
Rr435566	regulatory region 435566	1385 bp distal
Rr435567	regulatory region 435567	1536 bp distal
Rr435568	regulatory region 435568	884 bp distal
Rr435569	regulatory region 435569	458 bp proximal
Rr435570	regulatory region 435570	959 bp proximal
Tssr94720	transcription start site region 94720	940 bp upstream
Tssr98573	transcription start site region 98573	1438 bp upstream
Tssr98574	transcription start site region 98574	1382 bp upstream
Zfr2	zinc finger RNA binding protein 2	948 bp upstream