rs215944147 SNP Detail

Summary

• ID
  rs215944147
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:43630961 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACGTGCATG TGTGTGAGTG
  TGTGTGTGTG TTTATGTATG TGTTTATGTT TGTGTTTGCT TGTACTAAGA TGCATGTGTA
  GTGGTCAGAG AACATTTTCT GAGATTTGAT TATCTCCTTT CACCACGTGG ATCCCATGGG
  TCTAACATAG GTCATCAGAA TTGGCACTAA GTGTCCTTAT TCCCTGATCC ACCTCAGCAT
  Y
  TCTGCATAAT GAAATTTCTT TCTCCCATAT CCAAGAAGAC CTATTTTTAT CAAGGCTACA
  GTGACCTTCA CCATTCTGTA GCTAAAATCA ATTTGAGCTC CTCCTTCTTC TCTTTCTTAA
  AGTAAAATGT GTCTCTTTTG CTGTTGCTGT TTTTTCCTTT TGCAATCTTT ACGTTGAGCA
  CTGGGACCTA TCTTGACCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320269140	CHEV_2_43596469	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215944147					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:43630961 () rs orientation: forward

Symbol	Name	Function Class
Gm39804	predicted gene, 39804	within coordinates
Rr556297	regulatory region 556297	1009 bp distal
Tssr17595	transcription start site region 17595	1402 bp downstream
Tssr23874	transcription start site region 23874	1920 bp upstream