rs215946723 SNP Detail

Summary

• ID
  rs215946723
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:4262867 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGG GAAAAAAATA GAAAGAAACA
  M
  CCCAACAACA AAGTCTGTCC CACTC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325715571	CHEV_19_4212813	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215946723					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:4262867 () rs orientation: forward

Symbol	Name	Function Class
Clcf1	cardiotrophin-like cytokine factor 1	1612 bp upstream
Cpgi10392	CpG island 10392	1341 bp proximal
Gm45928	predicted gene, 45928	1544 bp upstream
Gm59210	predicted gene, 59210	within coordinates
Rr358111	regulatory region 358111	267 bp distal
Rr363316	regulatory region 363316	within coordinates
Rr405789	regulatory region 405789	1352 bp upstream
Tssr154300	transcription start site region 154300	1538 bp upstream
Tssr154301	transcription start site region 154301	1554 bp upstream
Tssr154302	transcription start site region 154302	1570 bp upstream
Tssr154303	transcription start site region 154303	1603 bp upstream