rs215947987 SNP Detail

Summary

• ID
  rs215947987
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:67143648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGGGACCT GAAACTGGCC
  CAAGAGTCCA CAATGGACAT AGAAAACGAT AAACAGCAGC TCGATGAGAA ACTCAAAAAG
  TAAGCGTTAT AGGATTCAGC CCTGACTTCT CACTGTGTGG GTGCAGGGGA AACACGGGTT
  TGAGTGTTTC CAAATGATTG CTTCATCATA TTTGGGGTGA AATAAACAAG GGCCAGCTTT
  W
  AAAATATTTA ATTAAAATGG CACTGGGTAG ATTTGTAAAA CATGTGTTTC TCTCTATTTT
  AAGGCAATCA GTATAAAAAG TTCAATTATG CATAGGTAGG AAGGCTGGGG GAAGAATTAA
  CCATGAGCTA ATGTGCTGCT GTTAAACTAG GAAAGAGTTT GAAATGAGCA ATCTGCAGAG
  CAAGATTGAG GACGAGCAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383730832	MGP_WTSI_11_67066324	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	T	A	A	A	A	A	A	A	T	T	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs215947987					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	T	A	A	A	A	A	A	A	T	T	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383730832	MGP_WTSI_11_67066324	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:67143648 () rs orientation: forward

Symbol	Name	Function Class
Myh4	myosin, heavy polypeptide 4, skeletal muscle	within coordinates
Rr449442	regulatory region 449442	976 bp proximal
Tssr3527	transcription start site region 3527	1945 bp upstream
Tssr3528	transcription start site region 3528	1911 bp upstream
Tssr3529	transcription start site region 3529	1967 bp upstream
Tssr102195	transcription start site region 102195	1985 bp downstream
Tssr102196	transcription start site region 102196	1946 bp downstream
Tssr102197	transcription start site region 102197	1902 bp downstream
Tssr102198	transcription start site region 102198	1841 bp downstream
Tssr102199	transcription start site region 102199	1087 bp downstream
Tssr102200	transcription start site region 102200	936 bp downstream
Tssr102201	transcription start site region 102201	653 bp upstream
Tssr102202	transcription start site region 102202	1175 bp upstream
Tssr102203	transcription start site region 102203	1235 bp upstream
Tssr102204	transcription start site region 102204	1633 bp upstream
Tssr102205	transcription start site region 102205	1851 bp upstream
Tssr102206	transcription start site region 102206	1955 bp upstream
Tssr108529	transcription start site region 108529	1864 bp upstream
Tssr108530	transcription start site region 108530	1862 bp upstream
Tssr108531	transcription start site region 108531	1834 bp upstream
Tssr108532	transcription start site region 108532	1064 bp upstream
Tssr108533	transcription start site region 108533	912 bp upstream
Tssr108534	transcription start site region 108534	218 bp upstream
Tssr108535	transcription start site region 108535	112 bp upstream
Tssr108536	transcription start site region 108536	1222 bp downstream
Tssr108537	transcription start site region 108537	1234 bp downstream
Tssr108538	transcription start site region 108538	1736 bp downstream
Tssr108539	transcription start site region 108539	1944 bp downstream