rs215976901 SNP Detail

Summary

• ID
  rs215976901
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:142418037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCAATCTT ATCTTGAATT
  CTTAGAAGCA TTAAACACTA ATAGCATGAA GAGGTAACAT TTCTGATTAG TCCTGACCAC
  ATATAGCTTT TCCTCTAAGA AAAGAATTTC TTAATTTGCT TCTTATTTAT AAGGAAAATG
  CTCAGACAAA ACAATAACTT GCCCCTTGGT CTTGCAAACT TTATATGCCC CAGTATAGGG
  K
  AACACCAGGG CCAAGAAGTG GGAGTGGGTG GGTAGGGGAG AGGGGTGGGG GGAGGGTATA
  GGGGACTTTC GGGATAACAT TTGAAATGTA AATGAAGAAA ATACCTAATA CAAAATTAGA
  AAAAGTTTTA AAAAATTCCT ACTTGGCCAT GACATTCATT TACATTTCTA ACATTAACAA
  GCCTATTCAG CCACTCACTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322044831	CHEV_6_142420831	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215976901					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:142418037 () rs orientation: forward

Symbol	Name	Function Class
Gys2	glycogen synthase 2	within coordinates
Tssr63950	transcription start site region 63950	487 bp downstream
Tssr63951	transcription start site region 63951	502 bp downstream
Tssr63952	transcription start site region 63952	533 bp downstream
Tssr63953	transcription start site region 63953	586 bp downstream
Tssr63954	transcription start site region 63954	649 bp downstream
Tssr63955	transcription start site region 63955	678 bp downstream
Tssr63956	transcription start site region 63956	764 bp downstream