rs215977603 SNP Detail

Summary

• ID
  rs215977603
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:129199180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    acacacaca cacacacaca cacacacaca
  cacacacaca cacacacaca cacaAATATG CCACCATAAA GAAAGAAACC CAATGCACAG
  TACATAACTG GGGTATGAGT ATTATCTATA CTTATAGTTC TGAACACCAG GAGACCCAGA
  G
  TGACAGAGGG GGGAAAGCTG CATTTTAAAA GAAATCCAAA TATTCTCATG AGCATCATAA
  ATGATTGCTG AGGTACTGTA TGGGATTAGT GAGGATGCGC TTCTTATTAA ATTGAGAATG
  CAGATTCGAA TCACCAACCT TAAGAAAAAT                                 
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319968989	CHEV_1_131168020	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215977603					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:129199180 () rs orientation: forward

Symbol	Name	Function Class
Cpgi699	CpG island 699	1674 bp proximal
Rr28456	regulatory region 28456	1620 bp proximal
Thsd7b	thrombospondin, type I, domain containing 7B	1859 bp upstream
Tssr8548	transcription start site region 8548	1993 bp upstream