rs215977811 SNP Detail

Summary

• ID
  rs215977811
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:55885883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATATTAGG TGTCCTGAGT
  CTAGGGTACC AAATCTTGGC CACTAGTCTT GCTTTTAAGC CAGACAAACC TAGGATGGTT
  TTCTAACTGT TTGCAGACTA GAGCTGTGTG TTTGCTTTTG AAGAGCATGA GATGATTCTG
  GAGTTGAGTC CGTTAGACAT TCTGCCGTGT GACTCAACAC CTCCCTGGGC AGCCACCCAC
  Y
  GCACTCCCCT CCTGCATGCC ACAGGGACTG TTTTAGGCCC TGTTCTATCT GAGGGTCTCA
  ACTCAAATAG GTTAAACCCA CACCAATGTA CCTGGCCCTG GATCCTATGA AAAGCCCAGG
  AAAAGTAAGT TCAGTGGATG CTTTTCTTCC CACTTCTCTG CTTCTCCCTC TTTCCTCTTC
  CTTGGAGAAA GCACATCTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402852454	MGP_WTSI_19_55971941	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs215977811					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402852454	MGP_WTSI_19_55971941	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:55885883 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11085	CpG island 11085	1682 bp distal
Rr363576	regulatory region 363576	within coordinates
Tcf7l2	transcription factor 7 like 2, T cell specific, HMG box	within coordinates
Tssr157135	transcription start site region 157135	1997 bp downstream
Tssr157136	transcription start site region 157136	1968 bp downstream
Tssr157137	transcription start site region 157137	1954 bp downstream
Tssr157138	transcription start site region 157138	1940 bp downstream
Tssr157139	transcription start site region 157139	1885 bp downstream
Tssr157140	transcription start site region 157140	1870 bp downstream
Tssr157141	transcription start site region 157141	1860 bp downstream
Tssr157142	transcription start site region 157142	1031 bp downstream
Tssr157143	transcription start site region 157143	462 bp upstream
Tssr157144	transcription start site region 157144	490 bp upstream
Tssr157145	transcription start site region 157145	500 bp upstream
Tssr157146	transcription start site region 157146	812 bp upstream
Tssr157147	transcription start site region 157147	826 bp upstream
Tssr157148	transcription start site region 157148	1145 bp upstream
Tssr157149	transcription start site region 157149	1494 bp upstream