rs215981209 SNP Detail

Summary

• ID
  rs215981209
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5876633 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGTGTTAGT AGCTAGGCCC CACCATAACA
  CATGGAAGAC AACCTTCAAC CAACAACCAC AACTGGGAAA AAGAAACCAG TTCACTGCAA
  TAAAAACTCt gtgtgtgtgt gtgtgtgaga gagtgtgtgt gtgagaatgt gtgtgtgtgt
  R
  tgtgtgagtg tgtgtgtgag tatgtgtgag tgtgtgtgta tgtgtgtgag tgagtgtgta
  tgtgtgAGAT GTAGGTAAGG CTGTAGAGGA CGGGATGGTA ACTCAGCCAC AGATGCAGTG
  ATGACAGGAA AACGCCATTC AAACCTTTCA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325717592	CHEV_19_5826605	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215981209					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5876633 () rs orientation: forward

Symbol	Name	Function Class
Gm55522	predicted gene, 55522	1898 bp upstream
Neat1	nuclear paraspeckle assembly transcript 1 (non-protein coding)	within coordinates
Rr359206	regulatory region 359206	1768 bp proximal
Tssr157766	transcription start site region 157766	598 bp upstream
Tssr157767	transcription start site region 157767	66 bp downstream
Tssr157768	transcription start site region 157768	162 bp downstream
Tssr157769	transcription start site region 157769	224 bp downstream
Tssr157770	transcription start site region 157770	314 bp downstream
Tssr157771	transcription start site region 157771	354 bp downstream
Tssr157772	transcription start site region 157772	1560 bp downstream
Tssr157773	transcription start site region 157773	1691 bp downstream