rs215983520 SNP Detail

Summary

• ID
  rs215983520
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:30478158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAGATGGG CCAAGGAGAT
  GGATAGACGT TGACTTCCCA GCATTCCCAC TCTCTAGTGT AGTACCTACA AACCAGCTAC
  AAGGACTTTC TGTTGGATCT ATCTGCCTTT CTGGGTTCTG ACTCTGAAGG AAGTACTACT
  ATAATCACAA GAGCCAAATC CTTAACACTA TCGAGCCCCT CTCCTTGAAC CCCGCCCTCC
  T
  CCCCCCCCCC CCCCCCCGTC AAAATAAAAA TCATTCTGAT AATTAAAAGG TAAGTTATTT
  TAGTTGTTAG AATAATACTC AAAAATGTAA GAACACTTTT ACAAACGACT ACATAAATGA
  AAATTCAGTA AAATATTAAG TTAATTTTTG TTTAAACTAG TTTTCATATA TTCCAGACTG
  ACCTAAAACT GTCAAGCTCT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S5/SvEvBrd	A/J	C3H/HeJ	C57BL/6J	CAST/EiJ	KK/HlJ	SM/J	ZALENDE/EiJ
ss379891940	MGP_WTSI_10_30321968	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S5/SvEvBrd	A/J	C3H/HeJ	C57BL/6J	CAST/EiJ	KK/HlJ	SM/J	ZALENDE/EiJ
rs215983520					SNP	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379891940	MGP_WTSI_10_30321968	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:30478158 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1419	CpG island 1419	1203 bp distal
Gm20300	predicted gene, 20300	1033 bp downstream
Hint3	histidine triad nucleotide binding protein 3	1033 bp downstream
Rr368960	regulatory region 368960	1345 bp downstream
Rr429537	regulatory region 429537	1424 bp distal
Rr429538	regulatory region 429538	923 bp distal
Trmt11	tRNA methyltransferase 11	1413 bp upstream
Tssr97172	transcription start site region 97172	1461 bp upstream