rs215993640 SNP Detail

Summary

• ID
  rs215993640
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:40060374 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGCCATCT CTATGTGGTA
  TTTTTTTTTT AGATAACCAA GACATGCTGA TTCTATATTT ACAAAATTGA TCACAACAGC
  AAAGTTTTTT TTTTAAATGA GGACTTTACC ATGGTATGTC TAACTGAATG ATCAGAGCAT
  GGCTGTTGTT CACCCCACAC ATGCTCATAA CATGTATTTC ACAGGTAGAC TCTCCTGGGA
  W
  GACAGAAGAG GCGCTCTTTG ATTTGAAGAA TCTAAGTGTG GTGTGTGTGT GTGTGTGTGT
  GTGTACTACA TTCTCTTCAA AATTATTACA TTAAAGCATA TTCATCCTAT ACACATAAAA
  TTACTGATGG CCTAGACATA TCAGCGGATA TTTAATATTT AGTGCTCGAT GCCCTGGTTT
  TGTGCAATTC AATAAGAAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss374370467	MGP_WTSI_8_40692687	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs215993640					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss374370467	MGP_WTSI_8_40692687	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:40060374 () rs orientation: forward

Symbol	Name	Function Class
Msr1	macrophage scavenger receptor 1	within coordinates
Tssr2550	transcription start site region 2550	1859 bp upstream
Tssr81004	transcription start site region 81004	1949 bp upstream
Tssr81005	transcription start site region 81005	1924 bp upstream
Tssr81006	transcription start site region 81006	1887 bp upstream
Tssr81007	transcription start site region 81007	1822 bp upstream
Tssr81008	transcription start site region 81008	1721 bp upstream
Tssr81009	transcription start site region 81009	1690 bp upstream
Tssr81010	transcription start site region 81010	1668 bp upstream
Tssr81011	transcription start site region 81011	1601 bp upstream
Tssr81012	transcription start site region 81012	1572 bp upstream
Tssr81013	transcription start site region 81013	1408 bp upstream
Tssr81014	transcription start site region 81014	1375 bp upstream
Tssr81015	transcription start site region 81015	214 bp downstream
Tssr81016	transcription start site region 81016	819 bp downstream