rs215994626 SNP Detail

Summary

• ID
  rs215994626
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9675456 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CACCCTTGC CCCTGGGCCC ATGTCTCCCT
  CTGGTGGGAA AAGCGTAGGT TTAGACGGCA GGAAGGTGTT TGCTTAAGAG ATTTGCTCAA
  GAGTGGTTCT CAGATGGCGA CCACTGGTGC TCAAGTGGAG TTCGACCAGG TGTGCCAACC
  Y
  CAGGTTTGGG GTCAGTTCCC AGCCTGAGTC CTCAGTCATG GAGATTCCTG CAACATTTCC
  CTGGCCCTCT CTACCAGGTT CCTTTGAGCA CCAGGTTGTA GGCCTTGCCT CATGTTCTCA
  GCTCTGTGCA GGTTTGGCCC TCCTATGTGT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320651681	CHEV_3_9610396	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215994626					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9675456 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12974	CpG island 12974	within coordinates
Gm56803	predicted gene, 56803	1413 bp downstream
Rr69501	regulatory region 69501	145 bp proximal
Rr73453	regulatory region 73453	1145 bp proximal
Rr78141	regulatory region 78141	within coordinates
Tssr28346	transcription start site region 28346	1572 bp downstream
Tssr28347	transcription start site region 28347	1555 bp downstream
Tssr32578	transcription start site region 32578	356 bp upstream
Tssr32579	transcription start site region 32579	310 bp upstream
Tssr32580	transcription start site region 32580	272 bp upstream
Tssr32581	transcription start site region 32581	149 bp upstream
Zfp704	zinc finger protein 704	311 bp upstream