rs216000602 SNP Detail

Summary

• ID
  rs216000602
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:57011393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATCAATCG CTGTGAGCAC
  GGCGACCCAA GGAGCCGGGC TGCGGAGGAG GCACAGGGAT AGGCGAGGGG GTGGGAGTCA
  GGGAAAAAGG AGGAAGGGGG GAGTCGGAGG TGGGAGCGGG GTGGCAAGGA CCTCATGCAC
  CGGGCGACGA AGGACGGATG GCTGAGGACT GAGTGTGGCG CGAGGCGGTG GCCACGGCCG
  R
  CGAATGGGTG CGTCTAAGCG CTGACGAACG CCAGGGCCCA GGGTCTGGTC CTCCTCCTTG
  TAGCAAGTCC AGGGCGCAGC CGCCTCGCCC AGCCCCTAGG CGCACTCGTC CCGGCGCGCA
  GGCTGCGGCG ACTAGGCGGG CGCTCCGTGT CGCGGCTCGC CGCAGAGGCG CAGGCTGGCG
  CTCGGGAGGC GGCAGAGGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss349733847	MGP_WTSI_1_57029078	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216000602					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349733847	MGP_WTSI_1_57029078	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:57011393 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9130024F11Rik	RIKEN cDNA 9130024F11 gene			within coordinates
Cpgi268	CpG island 268			1017 bp distal
Cpgi269	CpG island 269			within coordinates
Rr411276	regulatory region 411276			1872 bp distal
Rr411277	regulatory region 411277			1318 bp distal
Rr411278	regulatory region 411278			744 bp distal
Rr411279	regulatory region 411279			387 bp distal
Rr411280	regulatory region 411280			within coordinates
Rr411281	regulatory region 411281			258 bp proximal
Satb2	special AT-rich sequence binding protein 2			Intron
				mRNA-UTR
Tssr6736	transcription start site region 6736			729 bp downstream
Tssr6737	transcription start site region 6737			190 bp downstream
Tssr6738	transcription start site region 6738			28 bp downstream
Tssr6739	transcription start site region 6739			321 bp upstream
Tssr6740	transcription start site region 6740			1798 bp upstream
Tssr11747	transcription start site region 11747			956 bp upstream
Tssr11748	transcription start site region 11748			929 bp upstream
Tssr11749	transcription start site region 11749			905 bp upstream
Tssr11750	transcription start site region 11750			887 bp upstream
Tssr11751	transcription start site region 11751			525 bp upstream
Tssr11752	transcription start site region 11752			495 bp upstream
Tssr11753	transcription start site region 11753			474 bp upstream
Tssr11754	transcription start site region 11754			453 bp upstream
Tssr11755	transcription start site region 11755			22 bp upstream
Tssr11756	transcription start site region 11756			within coordinates
Tssr11757	transcription start site region 11757			203 bp downstream