rs216003963 SNP Detail

Summary

• ID
  rs216003963
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94901313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACACGGA GCATCCTCCC
  GTCAGGTTTC CCCGTCCAGC CCCGCCCGCG CCTCCTGCTT CCCGCAGACC TTCTCCCTGC
  ATCCCTACAC ACCTCGCCTC TCCATTCTTT CCGGGACTCT CCCCGCCGAT CCCCCACAAC
  ACCCTGGAAT GGAGCGACTC CAGCCAGCCC GGAGCCCCCC GCGACCGGGG TGAAAGTCCT
  Y
  CGCCCCTCTC CTGCCCGGCA GTCGCCCCGA ACACCATGGG CCTGAGGGGT TCCCGGGGCG
  CCGGACGCTG AAAATGACGG ATGCTGGAGG TGAGGGGCCG GGTCCCCTAG GGTGGAAGGG
  GAAGCGTGGC TAGCGACTAC TGGACTCAAG GTGGGACCCT CAGTAGGGCT AAATGGATTT
  AAGCCACAAG GGCCTTTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384337423	MGP_WTSI_11_94871801	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216003963					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384337423	MGP_WTSI_11_94871801	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94901313 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3571	CpG island 3571	within coordinates
Gm36385	predicted gene, 36385	236 bp upstream
Gm51875	predicted gene, 51875	1153 bp upstream
Gm72634	predicted gene, 72634	within coordinates
Rr250	regulatory region 250	1835 bp proximal
Rr454923	regulatory region 454923	1144 bp distal
Rr454924	regulatory region 454924	598 bp distal
Rr454925	regulatory region 454925	247 bp distal
Rr454926	regulatory region 454926	within coordinates
Rr454927	regulatory region 454927	493 bp proximal
Rr454928	regulatory region 454928	1401 bp proximal
Samd14	sterile alpha motif domain containing 14	within coordinates
Tssr104328	transcription start site region 104328	705 bp downstream
Tssr104329	transcription start site region 104329	597 bp downstream
Tssr104330	transcription start site region 104330	568 bp downstream
Tssr104331	transcription start site region 104331	540 bp downstream
Tssr104332	transcription start site region 104332	524 bp downstream
Tssr104333	transcription start site region 104333	458 bp downstream
Tssr104334	transcription start site region 104334	401 bp downstream
Tssr104335	transcription start site region 104335	372 bp downstream
Tssr104336	transcription start site region 104336	302 bp downstream
Tssr104337	transcription start site region 104337	211 bp downstream
Tssr104338	transcription start site region 104338	194 bp downstream
Tssr104339	transcription start site region 104339	122 bp downstream
Tssr104340	transcription start site region 104340	108 bp downstream
Tssr104341	transcription start site region 104341	68 bp downstream
Tssr104342	transcription start site region 104342	4 bp downstream
Tssr110238	transcription start site region 110238	162 bp upstream
Tssr110239	transcription start site region 110239	1705 bp downstream