rs216007841 SNP Detail

Summary

• ID
  rs216007841
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:105216255 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAGATGCC TGTGGATCTA
  AGCCTTGAGA GTCCTCAGAG GCCCTTGGGC CAACTGAGTT AAGTACAGAA GCTGTCAGAA
  GACAGTTCAG CTCATACACA CATCCTTGCC TGAAACTGGG AAGAACTCCT TGTTTGGGAG
  CTTTGCTGAG CCCACAGACA TCCTCAAAGC ACAGCATAAG GCCTGTCCTC CACACAAGGG
  R
  CTGCTTACAG AATGGGTGCT GGTCTTGAAC AAACCTTGAT CCCTGGGTTG GCATTCCGTT
  GGGACAGCTT CTCTTCCTCC TGGGGAACTG GTTCTGGGCT GGAGGCAGAT GGGAACACTT
  GACACAGCAC CTCTATTTTT AGAGTTCTCC CAATACCCGT TCTACATAGA CCCAGTCTAA
  CCGTAGTCTG CTGCATCTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372621088	MGP_WTSI_7_112715562	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	G	A	G	G	A	A	G	A	G	A	G	A	A	A	G	G	A	A	A	G	A	G	A	A	A	A	A	G	A	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216007841					SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	G	A	G	G	A	A	G	A	G	A	G	A	A	A	G	G	A	A	A	G	A	G	A	A	A	A	A	G	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372621088	MGP_WTSI_7_112715562	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:105216255 () rs orientation: forward

Symbol	Name	Function Class
Apbb1	amyloid beta precursor protein binding family B member 1	within coordinates
Rr652775	regulatory region 652775	841 bp proximal
Rr652776	regulatory region 652776	1719 bp proximal
Tssr74041	transcription start site region 74041	1559 bp upstream
Tssr74042	transcription start site region 74042	1525 bp upstream
Tssr74043	transcription start site region 74043	1459 bp upstream
Tssr74044	transcription start site region 74044	1598 bp downstream