rs216020770 SNP Detail

Summary

• ID
  rs216020770
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99242462 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCTCACAGG CCCACACCTC
  CTTACCACCT GACTCAATGT GTTTGCACAG AGTGTGGAAG ATGCACACGT GAGGGAGAGT
  TGCAAAGACA GTGGCTGGCT GTGAGTGCAA TGTTCAATGT CCAACGTGAG ACCCGTGACA
  TCCTTTGGGA CTTTATTGCC CCAGCGGGAT TGTTCTCTCT GTTCCCAGAC ACACCAAGTT
  Y
  GTTCAACATC AAAGCTTTCA GGTTCCTCTC TGCAGAATGG CCTCCTCCTT AGTCTTCCAT
  AGAGTACAGT AGAGGTGAGG ATGTTACTCG ATGTTTTCCA TTCTACCAAA CCCTGTTTAT
  AACAACAAAC TGCTTTCCTA AGTTAACTGT AAGAGACTAT TGAGAATATG GCATTAAAAT
  CTTATACACA CACACACACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323135634	CHEV_9_99260828	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216020770					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99242462 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22193	CpG island 22193	1704 bp distal
Esyt3	extended synaptotagmin-like protein 3	1852 bp upstream
Rr198328	regulatory region 198328	339 bp proximal
Rr206935	regulatory region 206935	1661 bp distal
Tssr91051	transcription start site region 91051	1857 bp upstream