rs216023228 SNP Detail

Summary

• ID
  rs216023228
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112794124 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATGTATGA CTGTATTTCA
  TGTTCGAGCC TACAAGTGAT TGTGGGCTTC AGTGTGGGTG CTAACAACCT TATCAGGTCC
  TTTGTCAGAA CAGCAAGTAT TCTTAATCCC TGAGTGTCTT GAGTAAGCTA ACGTGTAGTT
  AGTATAACAA GTAGTGTAAC AAAAGTTATG TTTCATTATG CTGAGGGTCA TTCACACTCT
  M
  AATTCCTATG TGGTCCTAAG CCTGTCTCCC CAACACTGCT CACCTGTCTA GGTATCTTAG
  CTGAAGGTCA GGTCCAGGCT CTAACATAAG TCTCTGATCC TGGAAGGTTC AGGATCCTAG
  GGAGACTCTC CAGCTGCAGG GCAAATCAGG GTGGCTTCTC TCCAGATGTG CAGGACAGAG
  CATTGTTCTT GGTCTCTGCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387393586	MGP_WTSI_12_114068715	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216023228					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387393586	MGP_WTSI_12_114068715	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112794124 () rs orientation: forward

Symbol	Name	Function Class
Cdca4	cell division cycle associated 4	1081 bp upstream
Cpgi5185	CpG island 5185	345 bp distal
Gm52009	predicted gene, 52009	228 bp downstream
Gm56552	predicted gene, 56552	within coordinates
Rr387795	regulatory region 387795	176 bp downstream
Tssr3960	transcription start site region 3960	1025 bp upstream
Tssr115439	transcription start site region 115439	1343 bp downstream
Tssr115440	transcription start site region 115440	819 bp downstream
Tssr115441	transcription start site region 115441	514 bp upstream
Tssr117911	transcription start site region 117911	1398 bp upstream
Tssr117912	transcription start site region 117912	1078 bp upstream
Tssr117913	transcription start site region 117913	1000 bp upstream